ELEPHANT TP53 GENE LIST OF SINLE NUCLEOTIDE POLIMORPHISM OF CLINICAL

To find the single nucleotide polymorphisms of query sequence XM_010596586, the nucleotide sequence was first retrieved from NCBI database.
Outputs of NCBI Database
Send to:PREDICTED: Loxodonta africana tumor protein p53 (TP53), transcript variant X2, mRNA
NCBI Reference Sequence: XM_010596586.2
FASTA  HYPERLINK “https://www.ncbi.nlm.nih.gov/nuccore/XM_010596586.2?report=graph” Graphics HYPERLINK “https://www.ncbi.nlm.nih.gov/nucleotide/XM_010596586.2?report=genbank&log$=nucltop&blast_rank=1&RID=JNFPSG6F015” l “goto1328784643_0” Go to:
LOCUS XM_010596586 2317 bp mRNA linear MAM 16-JAN-2018
DEFINITION PREDICTED: Loxodonta africana tumor protein p53 (TP53), transcript
variant X2, mRNA.
ACCESSION XM_010596586
VERSION XM_010596586.2
DBLINK BioProject: PRJNA70973KEYWORDS RefSeq.
SOURCE Loxodonta africana (African savanna elephant)
ORGANISM Loxodonta africana Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae;
Loxodonta.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_003573467.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI’s Annotation Process

On Jan 16, 2018 this sequence version replaced XM_010596586.1.

##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Loxodonta africana Annotation Release 102 Annotation Version :: 102
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..2317
/organism=”Loxodonta africana”
/mol_type=”mRNA”
/isolate=”ISIS603380″
/db_xref=”taxon:9785″
/chromosome=”Unknown”
/sex=”female”
/country=”USA: San Diego Zoo, CA”
gene 1..2317
/gene=”TP53″
/note=”Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 66 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 15 samples with support for all annotated
introns”
/db_xref=”GeneID:100663725″
CDS 245..1417
/gene=”TP53″
/codon_start=1
/product=”cellular tumor antigen p53 isoform X2″
/protein_id=”XP_010594888.1″
/db_xref=”GeneID:100663725″
/translation=”MEEPQSDLSTELPLSQETFSYLWELLPENPVLSPTLPPAVEVMD
DLLLSEDTANWLESQVEAQGMSTTPAPATPTPVAPAPATSWTLSSSVPSQKTYPGTYG
FRLGFLHSGTAKSVTCTYSPDLNKLFCQLAKTCPVQLWVASPPPPGTRVRTMAIYKKS
EHMTEVVKRCPHHERCSDSSDGLAPPQHLIRVEGNLRAEYLEDSITLRHSVVVPYEPP
EVGSDCTTIHFNFMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRICACPGRD
RRTEEENFHKKGEPCPEPPPPGRSTKRALPTNTSSSTQPKKKPLDEEYFTLQIRGRER
FKMFLELNEALELKDAQAGKEPEGSRAHSSPSKSKKGQSTSRHKKPMFKREGPDSD”
ORIGIN
1 gcccaaagcc accatcctgg ttgcagctag ctgctgggct ctggcggtac ctggtgtccg
61 ggctcggacc gtgcttccaa ggacggttac acgctcgcct gaggttcggg tcacttaaac
121 cttctccgag tctcaccttt tttacctgta aagtggcagg tgtggctttc aggacaaata
181 agataatcgc tgtgaaagga ttttacaaac tcttaggggc cagattgccc tccctggagc
241 tgcaatggag gagccccagt cagatctcag caccgagctc cctctgagtc aagagacgtt
301 ttcatactta tgggaactcc ttcctgagaa tccggttctg tcccccacac tacccccggc
361 agtggaggtc atggacgatc tgctactctc agaagacact gcaaactggc tagaaagcca
421 agtggaggct cagggaatgt ccacaacccc tgcaccagcc acccctacac cggtggcccc
481 cgcaccagcc acctcctgga ccctgtcatc ttccgtccct tcccaaaaga cctaccctgg
541 cacctatggt ttccgtctgg gcttcctaca ttctgggaca gccaagtccg tcacctgcac
601 gtactcccct gaccttaaca agctgttttg ccagctggca aaaacctgcc cagtgcagct
661 gtgggtcgcc tcaccacccc cgcccggcac ccgtgttcgc accatggcca tctacaagaa
721 gtcagagcat atgacggagg tcgtcaagcg ctgcccccac catgagcgct gctctgactc
781 tagcgatggc ctggcccctc ctcagcacct catccgggtg gaaggaaacc tgcgtgctga
841 gtatctggag gacagcatca ctctccgaca cagtgtggtg gtgccctacg agccgcccga
901 ggtcgggtct gactgtacca ccatccactt caacttcatg tgtaacagct cctgcatggg
961 gggcatgaac cggcggccca tcctcaccat catcacactg gaagactcca gtggtaatct
1021 gctgggacgt aacagctttg aggtgcgcat ttgtgcctgt cctggaagag acagacgtac
1081 agaagaagaa aatttccaca agaagggaga gccttgccca gagccgccac cccctgggag
1141 gagcactaag cgagcactgc ccaccaacac cagctcctct acccagccaa agaagaagcc
1201 actggatgaa gaatatttca cccttcagat ccgtgggcgt gaacgcttca agatgttcct
1261 agagctaaat gaggccttgg agctgaagga tgcccaggct gggaaggagc cagaggggag
1321 ccgggctcac tccagccctt cgaagtctaa gaagggacag tctacctccc gccataaaaa
1381 accaatgttc aagagagagg gacctgactc agactgaagt ccttcccttc ctgtccccca
1441 tttacacacc ccacccctgt cctcctttcc tactattttg aaactcaggt gcttgaaccc
1501 ggtttcatac aggtgtgcct ccgaaacacc caggaattta tcatttacct tggcctgggc
1561 ctctactaaa gaagttggcc tgcactggtg ttttttatgg ggtgagggca gctgggacac
1621 tccagcttct atttttaagg tttttactat aaggaatgct tgggagagat aggataatat
1681 tccagcatgt aagagttaaa ttttaaaatc agtcatggaa ccagccatac ctgggttgga
1741 agcccagagc accagcagac tagccaggga agctatctca aggtgtttaa tttctcctga
1801 aagcaatgta cacatctata aaatgctgat acctacctca cggtgcttgc tgtgaggtta
1861 atgaaatgat gtatctatga cccaacaatc ccagagggct gggaggtcat cagcctgcct
1921 ggccttagaa ccctcaggtt acatggcatc tgggccttgg ccccttgggg gtgctagtcc
1981 cctgtccctg ttggttggtg gattgactgg gtaactggtt aaggggaggg agtttccaag
2041 tccctttttt gctggcctag ccagctcctg tctagcctgt cggtaaacct cagcacctta
2101 aaggaaacct caccccatca ctctcgctgg aggattccgg ctcctagtgg ggtctgtatc
2161 caccgccatc tgttttactg cccccaggtg ctcagggtct aatttctttt gcactctgga
2221 gggcacatct gtgttcttca cctgtacgcc ttcccctctt ccctttttat atcccatttt
2281 tatacctttc ttattttaca ataaaatttt gctatca
______________________________________________________________________________
SINGLE NUCLEOTIDE POLYMORPHISMS (SNPs) ARE SHOWN AS GAPS
The nucleotide sequence of the accession was subjected to FASTA and the first dissimilarity sequence was considered for predicting the SNPs
PREDICTED: Trichechus manatus latirostris tumor protein p53 (LOC101351852), transcript variant X2, mRNA
Sequence ID: XM_023731101.1Length: 2435Number of Matches: 1
Related Information
Gene-associated gene details
Range 1: 395 to 2435GenBankGraphicsNext MatchPrevious Match
Alignment statistics for match #1
Score Expect Identities Gaps Strand
2675 bits(1448) 0.0 1866/2066(90%) 36/2066(1%) Plus/Plus
Query 215 AGGGGCCAGATTGCCCTCCCTGGAGCTGCAATGGAGGAGCCCCAGTCAGATCTCAGCACC 274
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 AGTGGCCAGATTGCCTGCCCTGGAGCTGCAATGGAGGAGCCCCAGTCAGATCTCAGCACT 454
Query 275 GAGCTCCCTCTGAGTCAAGAGACGTTTTCATACTTATGGGAACTCCTTCCTGAGAATCCG 334
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 455 GAGCTCCCTCTGAGTCAAGAGACATTTTCATACTTATGGGAACTCCTTCCTGAGAAGCCG 514
Query 335 GTTCTGTCCCCCACACTACCCCCGGCAGTGGAGGT—-CA–T-G–GACGATCTGCTA 385
|||||||||||| | |||||||| ||||||||||| | | | || |||||||||
Sbjct 515 GTTCTGTCCCCCTCGCTACCCCCAGCAGTGGAGGTAGTAGAGGTAGCAGATGATCTGCTA 574
Query 386 CTCTCAGAAGACACTGCAAACTGGCTAGAAAGCCAAGTGGAGGCTCAGGGAATGTCCACA 445
||| | ||||| |||||| ||||||||||||||| || | |||||| | ||| || ||
Sbjct 575 CTCACGGAAGATGCTGCAACCTGGCTAGAAAGCCAGGTAGGGGCTCAAGAAATATCAGCA 634
Query 446 ACCCCTGCACCAGCCACCCCTACACCGGTGGCCCCCGCACCAGCCACCTCCTGGACCCTG 505
||| |||||||||||||||||||| ||||| | | ||||||||||||||||||||||
Sbjct 635 GGCCCCGCACCAGCCACCCCTACACCAGTGGCTCTCATACCAGCCACCTCCTGGACCCTG 694
Query 506 TCATCTTCCGTCCCTTCCCAAAAGACCTACCCTGGCACCTATGGTTTCCGTCTGGGCTTC 565
||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 695 TCATCCTCCGTCCCTTCTCAGAAGACCTACCCTGGCACCTATGGTTTCCGCCTGGGCTTC 754
Query 566 CTACATTCTGGGACAGCCAAGTCCGTCACCTGCACGTACTCCCCTGACCTTAACAAGCTG 625
|| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 755 CTGCATTCTGGGACAGCCAAGTCCGTCACCTGCACGTATTCCCCAGACCTTAACAAGCTG 814
Query 626 TTTTGCCAGCTGGCAAAAACCTGCCCAGTGCAGCTGTGGGTCGCCTCACCACCCCCGCCC 685
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||
Sbjct 815 TTTTGCCAGCTGGCAAAGACCTGCCCAGTGCAGCTGTGGGTCACCTCACCACCCCCACCT 874
Query 686 GGCACCCGTGTTCGCACCATGGCCATCTACAAGAAGTCAGAGCATATGACGGAGGTCGTC 745
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 875 GGCACCCGTGTTCGCACCATGGCGATCTACAAGAAGTCAGAGCATATGACAGAGGTCGTG 934
Query 746 AAGCGCTGCCCCCACCATGAGCGCTGCTCTGACTCTAGCGATGGCCTGGCCCCTCCTCAG 805
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 935 AAGCGCTGCCCCCACCATGAGCGCTGCTCTGACTATAGCGATGGCCTGGCCCCTCCTCAG 994
Query 806 CACCTCATCCGGGTGGAAGGAAACCTGCGTGCTGAGTATCTGGAGGACAGCATCACTCTC 865
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 995 CACCTCATCCGGGTGGAAGGAAACCTGCGTGCTGAGTATCTGGAGGACAGCGTCACTCTT 1054
Query 866 CGACACAGTGTGGTGGTGCCCTACGAGCCGCCCGAGGTCGGGTCTGACTGTACCACCATC 925
||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 1055 CGACATAGTGTGGTGGTGCCCTATGAGCCGCCCGAGGTCGGCTCTGACTGTACCACTATC 1114
Query 926 CACTTCAACTTCATGTGTAACAGCTCCTGCATGGGGGGCATGAACCGGCGGCCCATCCTC 985
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1115 CACTTCAACTTCATGTGTAACAGCTCCTGCATGGGAGGCATGAACCGGCGGCCCATCCTC 1174
Query 986 ACCATCATCACACTGGAAGACTCCAGTGGTAATCTGCTGGGACGTAACAGCTTTGAGGTG 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 ACCATCATCACACTGGAAGACTCCAGTGGTAATCTGCTGGGACGTAACAGCTTTGAGGTG 1234
Query 1046 CGCATTTGTGCCTGTCCTGGAAGAGACAGACGTACAGAAGAAGAAAATTTCCACAAGAAG 1105
||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1235 CGCATCTGTGCCTGTCCTGGGAGAGACAGACGTACAGAGGAAGAAAATTTCCACAAGAAG 1294
Query 1106 GGAGAGCCTTGCCCAGAGCCGCCACCCCCTGGGAGGAGCACTAAGCGAGCACTGCCCACC 1165
|| ||| ||| ||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 GGGGAGACTTCCCCTGA—GCCACCCCCTGGGAGGAGCACTAAGCGAGCACTGCCCACC 1351
Query 1166 AACACCAGCTCCTCTACCCAGCCAAAGAAGAAGCCACTGGATGAAGAATATTTCACCCTT 1225
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1352 AACACCAGCTCCTGTACCCAGCCAAAGAAGAAACCACTGGATGAAGAATATTTCACCCTT 1411
Query 1226 CAGATCCGTGGGCGTGAACGCTTCAAGATGTTCCTAGAGCTAAATGAGGCCTTGGAGCTG 1285
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1412 CAGATCCGTGGGCGTGAACGCTTCAAGATGTTCCTAGAGCTGAATGAGGCCTTGGAGCTG 1471
Query 1286 AAGGATGCCCAGGCTGGGAAGGAGCCAGAGGGGAGCCGGGCTCACTCCAGCCCTTCGAAG 1345
||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||
Sbjct 1472 AAGGATGCCCAGGCTGGGAAGGAGCCAGAAGGGAGCAGGGCTCACTCCAGCCCTCCGAAG 1531
Query 1346 TCTAAGAAGGGACAGTCTACCTCCCGCCATAAAAAACCAATGTTCAAGAGAGAGGGACCT 1405
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1532 TCTAAGAAGGGACAATCTACCTCCCGCCATAAAAAACTAATGTTCAAGAGAGAGGGGCCT 1591
Query 1406 GACTCAGACTGAAGTCCTTCCCTTCCTGTCCCCCATTTACACACCCCACCCCTGTCCTCC 1465
|||||||||||| ||||||| |||||||| |||||||||||||||||||||||| |||||
Sbjct 1592 GACTCAGACTGACGTCCTTCACTTCCTGTTCCCCATTTACACACCCCACCCCTGCCCTCC 1651
Query 1466 TTTCCTACTATTTTGAAACTCAGGTGCTTGAACCCGGTTTCATACAGGTGTGCCTCCGAA 1525
|||||| | ||||| ||||||||||| |||||||| | | ||||| |||||||||| ||
Sbjct 1652 TTTCCTGCCATTTTAAAACTCAGGTGTTTGAACCCTGCCTGATACAAGTGTGCCTCCAAA 1711
Query 1526 ACACCCAGGAATTTATCATTTACCTTGGCCTGGGCCTCTACTAAAGAAGTTGGCCTGCAC 1585
||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1712 ACACCCAGGAAATTGTCATTTACCTTGGCCTGGGCCTCCACTAAAGAAGTTGGCCTGCAC 1771
Query 1586 TGGTGTTTTTTATGGGGTGAGGGCAGCTGGGACACTCCAGCTTCTATTTTTAAGGTTTTT 1645
||||||| ||| ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1772 TGGTGTTGTTTGTGGGGTGAGGGCAGCTGGGACACTCCAGCGTCTATTTT-AAGGTTTT- 1829
Query 1646 ACTATAAGGAATGCTTGGGAGAGATAGGATAATATTCCAGCATGTAAGAGTTAAATTTTA 1705
|| | | |||| |||| | |||| |||||||||||| ||| ||||
Sbjct 1830 ——-GGCA-G——AGAG–AGGACCGTGTTCCTGCATGTAAGAGTCAAACTTTA 1873
Query 1706 AAATCAGTCATGGAACCAGCCATACCTGGGTTGGAAGCCCAGAGCACCAGCAGACTAGCC 1765
||| ||| ||||| | ||||| | ||||||||||||||||||| ||||||||||||||||
Sbjct 1874 AAACCAGCCATGGGAACAGCCGTCCCTGGGTTGGAAGCCCAGATCACCAGCAGACTAGCC 1933
Query 1766 AGGGAAGCTATCTCAAGGTGTTTAATTTCTCCTGAAAGCAATGTACACATCTATAAAATG 1825
||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||
Sbjct 1934 GCGGAAGCTATCTCAAGGTGTTTAATTTCTCCTGATAGCAGTGTACATATCTATAAAATG 1993
Query 1826 CTGATACCTACCTCACGGTGCTTGCTGTGAGGTTAATGAAATGATGTATCTATGACCCAA 1885
|||||||||||||||||| | | | ||||||||||||||||||||||| ||||||||||
Sbjct 1994 CTGATACCTACCTCACGGGGTTCACCGTGAGGTTAATGAAATGATGTATGTATGACCCAA 2053
Query 1886 CAATCCCAGAGGGCTGGGAGGTCATCAGCCTGCCTGGCCTTAGAACCCTC–AGGTTACA 1943
||||||||||||| ||| |||| ||||||||||| ||||| || ||| |||||| |
Sbjct 2054 TGATCCCAGAGGGCTAGGAAGTCACCAGCCTGCCTGACCTTAAAAACCTTTTAGGTTAGA 2113
Query 1944 TGGCATCTGGGCCTTGGCCCCTTGGGGGTGCTAGTCCCCTGTCCCTGTTGGTTGGTGGAT 2003
||| |||||| ||||||||||||| |||||| ||||||||||||||||||||| |||||
Sbjct 2114 TGGTGTCTGGGACTTGGCCCCTTGGAGGTGCTGGTCCCCTGTCCCTGTTGGTTGATGGAT 2173
Query 2004 TGACTGGGTAACTGGTTAAGGGGAGGGAGTTTCCAAGTCCCTTTTTTGCTGGCCTAGCCA 2063
||| |||| | ||||||||||||||||| ||||||||||||| || ||||||||||||||
Sbjct 2174 TGATTGGGCAGCTGGTTAAGGGGAGGGACTTTCCAAGTCCCTCTTCTGCTGGCCTAGCCA 2233
Query 2064 GCTCCTGTCTAGCCTGTCGGTAAACCTCAGCACCTTAAAGGAAACCTCACCCCATCACTC 2123
||||||| ||||| | |||||||||||| |||| ||| ||||||||||||||| | |
Sbjct 2234 AGTCCTGTCCAGCCTCTTGGTAAACCTCAGTACCTAAAACAAAACCTCACCCCATCCCAC 2293
Query 2124 TCGCTGGAGGATTCCGGCTCCTAGTGGGGTCTGTATCCACCGCCATCTGTTTTACTGCCC 2183
|| ||||||||||||||||| ||||||| |||||||||||| |||||| | || | |||
Sbjct 2294 TCCCTGGAGGATTCCGGCTCTTAGTGGGATCTGTATCCACCACCATCT-TATT–T-CCC 2349
Query 2184 CCAGGTGCTCAGGGTCTAATTTCTTTTGCACTCTGGAGGGCACATCTGTGTTCTTCACCT 2243
|||| |||||||||||||||||||||||||||||||| ||||||||||| || |||| |
Sbjct 2350 CCAGATGCTCAGGGTCTAATTTCTTTTGCACTCTGGAAGGCACATCTGTATTTCTCACTT 2409
Query 2244 GTACGCCTTCCCCTCTTCCCTTTTTA 2269
|||| ||||| ||||| || ||||||
Sbjct 2410 GTACCCCTTCTCCTCTCCCGTTTTTA 2435